RegRNA
A Regulatory RNA Motifs and Elements Finder
  Release 1.0, Jan 2006
 
 
 

Accession R0509
Feature Type Riboswitch
Name Glucosamine-6-phosphate riboswitch
Regulatory Motif
(RNAMotif descriptor)
descr

	h5(seq="^UAU$")

		ss(seq="^G$")

			h5(seq="^UUG$")

				ss(seq="^A$")

				h5(seq="^UACUU$")

					ss(seq="^AA$")

					h5(seq="^UUUAA$")

						ss(seq="^AGA$")

					h3

					ss(seq="^CAA$")

					h5(seq="^AAGAUGA$")

						ss(seq="^UA$")

						h5(seq="^CCA$")

							h5(seq="^GCC$")

								ss(seq="^GAAA$")

							h3

							ss(seq="^CCU$")

						h3

						ss(seq="^CAG$")

					h3

					ss(seq="^G$")


				h3

				ss(seq="^GA$")

			h3

		ss(seq="^A$")

	h3
Ligand GlcN6P (glucosamine-6-phosphate)
References Winkler WC, Nahvi A, Roth A, Collins JA, and Breaker RR
Control of gene expression by a natural metabolite-responsive ribozyme.
Nature 2004; 428(6980), 281-6   PubMed 

Mandal M, and Breaker RR
Gene regulation by riboswitches.
Nat Rev Mol Cell Biol 2004; 5(6), 451-63   PubMed 


Department of Biological Science and Technology, Institute of Bioinformatics, National Chiao Tung University, Taiwan
Contact with Dr. Hsien-Da Huang