RegRNA
A Regulatory RNA Motifs and Elements Finder
  Release 1.0, Jan 2006
 
 
 

Accession R0508
Feature Type Riboswitch
Name Theophyllie riboswitch
Regulatory Motif
(RNAMotif descriptor)
descr

	h5(minlen=5, maxlen=11)

		ss(minlen=2, maxlen=6)

		h5(minlen=5, maxlen=9)

			ss(minlen=5, maxlen=9, seq="gg$")

		h3 

		ss(minlen=6, maxlen=10, seq="^gu")

		h5(minlen=4, maxlen=8)

			ss(minlen=5, maxlen=9, seq="^cc")

		h3

		ss(minlen=2, maxlen=6)

	h3
Ligand Theophyllie
References Suess B, Fink B, Berens C, Stentz R, and Hillen W
A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo.
Nucleic Acids Res 2004; 32(4), 1610-4   PubMed 


Department of Biological Science and Technology, Institute of Bioinformatics, National Chiao Tung University, Taiwan
Contact with Dr. Hsien-Da Huang