RegRNA
A Regulatory RNA Motifs and Elements Finder
  Release 1.0, Jan 2006
 
 
 

Accession R0507
Feature Type Riboswitch
Name Adenine riboswitch
Regulatory Motif
(RNAMotif descriptor)
descr

	h5(len=2)

		h5(seq="^UCRUA$")

			ss(len=3, seq="^UA")

			h5(len=7)

				ss(seq="^RAUA$")

				ss(len=1)

				ss(seq="^GG$")

			h3

			ss(seq="^GU$")

			ss(len=1)

			ss(seq="^UCUAC$")

			h5(len=7)

				ss(seq="^CCGUAAA$")

			h3

			ss(seq="^AU$")

		h3

	h3
Ligand Adenine
References Winkler WC, and Breaker RR
Genetic control by metabolite-binding riboswitches.
Chembiochem 2003; 4(10), 1024-32   PubMed 

Mandal M, and Breaker RR
Adenine riboswitches and gene activation by disruption of a transcription terminator.
Nat Struct Mol Biol 2004; 11(1), 29-35   PubMed 

Mandal M, and Breaker RR
Gene regulation by riboswitches.
Nat Rev Mol Cell Biol 2004; 5(6), 451-63   PubMed 

Serganov A, Yuan YR, Pikovskaya O, Polonskaia A, Malinina L, Phan AT, Hobartner C, Micura R, Breaker RR, and Patel DJ
Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs.
Chem Biol 2004; 11(12), 1729-41   PubMed 


Department of Biological Science and Technology, Institute of Bioinformatics, National Chiao Tung University, Taiwan
Contact with Dr. Hsien-Da Huang