RegRNA
A Regulatory RNA Motifs and Elements Finder
  Release 1.0, Jan 2006
 
 
 

Regulatory Motif Classes
 
Regulatory RNA Motifs in UTR
Riboswitches
Exonic Splicing Regulatory Motifs
Intronic Splicing Regulatory Motifs
Transcriptional Regulatory RNA Motifs
miRNA
 
  197 entries
Accession Taxon Range Name Species
R0101 5'-UTR DHFR (dihydrofolate reductase) mouse, Mus musculus
R0102 3'-UTR A1(1) COL (alpha1 (I) collagen) human, Homo sapiens
R0103 3'-UTR A1(1) COL (alpha1 (I) collagen) human, Homo sapiens
R0104 3'-UTR A1(1) COL (alpha1 (I) collagen) human, Homo sapiens
R0105 3'-UTR A1(1) COL (alpha1 (I) collagen) human, Homo sapiens
R0106 5' UTR p53 mouse, Mus musculus
R0107 5' UTR IGF-1 receptor (insulin-like growth factor I receptor) rat, Rattus norvegicus
R0108 5' UTR IGF-1 receptor (insulin-like growth factor I receptor) rat, Rattus norvegicus
R0109 5' UTR IGF-1 receptor (insulin-like growth factor I receptor) rat, Rattus norvegicus
R0110 5' UTR IGF-1 receptor (insulin-like growth factor I receptor) rat, Rattus norvegicus
R0111 5' UTR IGF-1 receptor (insulin-like growth factor I receptor) rat, Rattus norvegicus
R0112 5' UTR IGF-1 receptor (insulin-like growth factor I receptor) rat, Rattus norvegicus
R0113 5'-UTR CPRF-1 (common plant regulatory factor) parsley, Petroselinum crispum (P. hortense)
R0114 5'UTR TERT (telomerase reverse transcriptase) human, Homo sapiens
R0115 5'-UTR FAS (fatty acid synthase) rat, Rattus norvegicus
R0116 5'-UTR c-jun human, Homo sapiens
R0117 5'-UTR VEGF (Vascular Endothelial Growth Factor) rat, Rattus norvegicus
R0118 3'-UTR VEGF (Vascular Endothelial Growth Factor) rat, Rattus norvegicus
R0119 5' UTR pidd mouse, Mus musculus
R0120 5'UTR PGK1 (phosphoglycerate kinase 1) human, Homo sapiens
R0121 5' UTR NCF4 (neutrophil cytosolic factor 4, 40kDa) human, Homo sapiens
R0122 exon 1 DHFR (dihydrofolate reductase) mouse, Mus musculus
R0123 exon 1 c-myc human, Homo sapiens
R0124 exon I rpL32 (ribosomal protein L32) mouse, Mus musculus
R0125 exon 5 A2UG (alpha-2u globulin, clone RAO 01) rat, Rattus norvegicus
R0126 exon 5 A2UG (alpha-2u globulin, clone RAO 01) rat, Rattus norvegicus
R0127 1st exon zeste fruit fly, Drosophila melanogaster
R0128 1st exon zeste fruit fly, Drosophila melanogaster
R0129 1st exon MMP-2 (matrix metalloproteinase 2) human, Homo sapiens
R0130 1st exon fra-1 (Fos-related antigen-1) rat, Rattus norvegicus
R0131 first Exon p53 human, Homo sapiens
R0132 exon 1 KERB1 (keratin B1) clawed frog, Xenopus laevis
R0133 promoter (upstream exon 1) BRCA1 (breast cancer susceptibiliy gene) mouse, Mus musculus
R0134 coding region (exon) VSM alpha-actin (vascular smooth muscle alpha actin) mouse, Mus musculus
R0135 exon PPARA (peroxisome proliferator-activated receptor alpha) human, Homo sapiens
R0136 exon Jun (v-jun sarcoma virus 17 oncogene homolog (avian)) rat, Rattus norvegicus
R0137 exon 1 COX7A2L (cytochrome c oxidase subunit VIIa polypeptide 2 like) human, Homo sapiens
R0138 exon 1 P22K15 (cystatin related protein 2) rat, Rattus norvegicus
R0139 exon D AR (androgen receptor) human, Homo sapiens
R0140 Exon E AR (androgen receptor) human, Homo sapiens
R0141 exon D AR (androgen receptor) human, Homo sapiens
R0142 exon 1 PIGR (PIGRpolymeric immunoglobulin receptor) human, Homo sapiens
R0143 1st intron enhancer B-ACT (beta-actin) human, Homo sapiens
R0144 intron I DHFR (dihydrofolate reductase) mouse, Mus musculus
R0145 1st intron, downstream enhancer EGFR (epidermal growth factor receptor) human, Homo sapiens
R0146 1st intron, downstream enhancer EGFR (epidermal growth factor receptor) human, Homo sapiens
R0147 1st intron, downstream enhancer EGFR (epidermal growth factor receptor) human, Homo sapiens
R0148 1st intron, downstream enhancer EGFR (epidermal growth factor receptor) human, Homo sapiens
R0149 1st intron, downstream enhancer EGFR (epidermal growth factor receptor) human, Homo sapiens
R0150 1st intron, downstream enhancer EGFR (epidermal growth factor receptor) human, Homo sapiens
R0151 1st intron, downstream enhancer EGFR (epidermal growth factor receptor) human, Homo sapiens
R0152 1st intron GLOB-BM (betaM-globin) mouse, Mus musculus
R0153 1st intron GLOB-BM (betaM-globin) mouse, Mus musculus
R0154 1st intron GLOB-BM (betaM-globin) mouse, Mus musculus
R0155 1st intron GH (growth hormone gene-1) human, Homo sapiens
R0156 3rd intron GH (growth hormone) rat, Rattus norvegicus
R0157 1st intron IE-1 (immediate early gene 1) hCMV, human cytomegalovirus
R0158 intron J-C IGHA1 (immunoglobulin heavy constant alpha 1) human, Homo sapiens
R0159 1st intron Krox-20 mouse, Mus musculus
R0160 intron I c-myc human, Homo sapiens
R0161 intron I rpL32 (ribosomal protein L32) mouse, Mus musculus
R0162 5th intron E74 (early ecdysone-inducible puff) fruit fly, Drosophila melanogaster
R0163 5th intron E74 (early ecdysone-inducible puff) fruit fly, Drosophila melanogaster
R0164 5th intron E74 (early ecdysone-inducible puff) fruit fly, Drosophila melanogaster
R0165 bx region within 3rd intron Ubx (ultrabithorax) fruit fly, Drosophila melanogaster
R0166 bx region within 3rd intron Ubx (ultrabithorax) fruit fly, Drosophila melanogaster
R0167 bx region within 3rd intron Ubx (ultrabithorax) fruit fly, Drosophila melanogaster
R0168 J-C intron TCR-beta (T-cell receptor beta) human, Homo sapiens
R0169 J-C intron TCR-beta (T-cell receptor beta) human, Homo sapiens
R0170 J-C intron TCR-beta (T-cell receptor beta) human, Homo sapiens
R0171 J-C intron TCR-beta (T-cell receptor beta) human, Homo sapiens
R0172 intron J-C, enhancer IGHA1 (immunoglobulin heavy constant alpha 1) human, Homo sapiens
R0173 intron IR (insulin receptor) human, Homo sapiens
R0174 1st intron GATA1 chick, Gallus gallus
R0175 1st intron GATA1 chick, Gallus gallus
R0176 1st intron GATA1 chick, Gallus gallus
R0177 1st intron GATA1 chick, Gallus gallus
R0178 1st intron PRST-C3 (prostatein C3(1) subunit) rat, Rattus norvegicus
R0179 intron III CRY-delta1 (delta1-crystallin) chick, Gallus gallus
R0180 intron B SEVL (sevenless) fruit fly, Drosophila melanogaster
R0181 intron B SEVL (sevenless) fruit fly, Drosophila melanogaster
R0182 intron B SEVL (sevenless) fruit fly, Drosophila melanogaster
R0183 intron B SEVL (sevenless) fruit fly, Drosophila melanogaster
R0184 intron B SEVL (sevenless) fruit fly, Drosophila melanogaster
R0185 intron B SEVL (sevenless) fruit fly, Drosophila melanogaster
R0186 1st intron ATPSB (ATP synthase beta-subunit) human, Homo sapiens
R0187 intron A2UG (alpha-2u globulin, clone RAO 01) rat, Rattus norvegicus
R0188 intron A2UG (alpha-2u globulin, clone RAO 01) rat, Rattus norvegicus
R0189 intron A2UG (alpha-2u globulin, clone RAO 01) rat, Rattus norvegicus
R0190 intron A2UG (alpha-2u globulin, clone RAO 01) rat, Rattus norvegicus
R0191 intron 1, enhancer apoB (apolipoprotein B) human, Homo sapiens
R0192 intron 1, enhancer apoB (apolipoprotein B) human, Homo sapiens
R0193 intron 1, enhancer apoB (apolipoprotein B) human, Homo sapiens
R0194 intron 1, enhancer apoB (apolipoprotein B) human, Homo sapiens
R0195 intron 1, enhancer apoB (apolipoprotein B) human, Homo sapiens
R0196 intron 2, enhancer apoB (apolipoprotein B) human, Homo sapiens
R0197 intron 2, enhancer apoB (apolipoprotein B) human, Homo sapiens
R0198 intron 2, enhancer apoB (apolipoprotein B) human, Homo sapiens
R0199 intron 2, enhancer apoB (apolipoprotein B) human, Homo sapiens
R0200 intron 2, enhancer apoB (apolipoprotein B) human, Homo sapiens
R0201 intron 2, enhancer apoB (apolipoprotein B) human, Homo sapiens
R0202 intron I hb (hunchback) fruit fly, Drosophila melanogaster
R0203 intron 2, enhancer apoB (apolipoprotein B) human, Homo sapiens
R0204 intron 2, enhancer apoB (apolipoprotein B) human, Homo sapiens
R0205 first intron Pcp-2 (cerebellar Purkinje cell-specific gene) mouse, Mus musculus
R0206 intron 1 ODC (ornithine decarboxylase) human, Homo sapiens
R0207 intron A2(1) COL (alpha2(I) collagen) mouse, Mus musculus
R0208 intron A2(1) COL (alpha2(I) collagen) mouse, Mus musculus
R0209 intron IgH (immunoglobulin heavy chain) mouse, Mus musculus
R0210 intron 1 fibroin silk moth, Bombyx mori
R0211 intron 1 fibroin silk moth, Bombyx mori
R0212 intron 1 fibroin silk moth, Bombyx mori
R0213 Intron 2 Cdx2 (caudal homolog homeobox protein 2) mouse, Mus musculus
R0214 second intron (IVS2) GLOB-B (beta-globin) human, Homo sapiens
R0215 second intron (IVS2) GLOB-B (beta-globin) human, Homo sapiens
R0216 second intron (IVS2) GLOB-B (beta-globin) human, Homo sapiens
R0217 second intron (IVS2) GLOB-B (beta-globin) human, Homo sapiens
R0218 second intron (IVS2) GLOB-B (beta-globin) human, Homo sapiens
R0219 second intron (IVS2) GLOB-B (beta-globin) human, Homo sapiens
R0220 second intron (IVS2) GLOB-B (beta-globin) human, Homo sapiens
R0221 second intron (IVS2) GLOB-B (beta-globin) human, Homo sapiens
R0222 enhancer (HS3) located in the last intron CD8A (CD8 antigen, alpha polypeptide) human, Homo sapiens
R0223 enhancer (HS3) located in the last intron CD8A (CD8 antigen, alpha polypeptide) human, Homo sapiens
R0224 enhancer (HS3) located in the last intron CD8A (CD8 antigen, alpha polypeptide) human, Homo sapiens
R0225 enhancer (HS3) located in the last intron CD8A (CD8 antigen, alpha polypeptide) human, Homo sapiens
R0226 enhancer (HS3) located in the last intron CD8A (CD8 antigen, alpha polypeptide) human, Homo sapiens
R0227 1st intron fra-1 (Fos-related antigen-1) rat, Rattus norvegicus
R0228 1st intron fra-1 (Fos-related antigen-1) rat, Rattus norvegicus
R0229 intron III CRY-delta1 (delta1-crystallin) chick, Gallus gallus
R0230 intron III CRY-delta1 (delta1-crystallin) chick, Gallus gallus
R0231 intron III CRY-delta1 (delta1-crystallin) chick, Gallus gallus
R0232 intron 4 Pax-6/Pax-QNR (paired box gene 6) quail, Coturnix japonica
R0233 intron 4 Pax-6/Pax-QNR (paired box gene 6) quail, Coturnix japonica
R0234 intron 4 Pax-6/Pax-QNR (paired box gene 6) quail, Coturnix japonica
R0235 intron 4 Pax-6/Pax-QNR (paired box gene 6) quail, Coturnix japonica
R0236 intron 4 Pax-6/Pax-QNR (paired box gene 6) quail, Coturnix japonica
R0237 intron 6 Pafaha/Lis1 (platelet-activating factor acetylhydrolase 1b alpha subunit/lissencephy-1 protein) mouse, Mus musculus
R0238 intron 2 RYR1 (ryanodine receptor I) domestic pig, Sus scrofa
R0239 intron 3 HO (heme oxygenase) rat, Rattus norvegicus
R0240 intron 2 PITPN (phosphatidylinositol transfer protein alpha isoform) mouse, Mus musculus
R0241 intron 2 PITPN (phosphatidylinositol transfer protein alpha isoform) mouse, Mus musculus
R0242 intron 13 GABA B1 (GABA B receptor 1) mouse, Mus musculus
R0243 intron 3 TAP (tapasin) mouse, Mus musculus
R0244 intron 16 A29COL (alpha2 (IX) collagen) mouse, Mus musculus
R0245 intron 1 CCRN4L (carbon catabolite repression 4-like) mouse, Mus musculus
R0246 first intron PCNA p120 (proliferating cell nucleolar antigen p120) human, Homo sapiens
R0247 intron 1 ODC (ornithine decarboxylase) mouse, Mus musculus
R0248 intron 1 ODC (ornithine decarboxylase) mouse, Mus musculus
R0249 intron 1 PFK-2/FBPase-2 (6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase) rat, Rattus norvegicus
R0250 intron 2 AG (Agamous) thale cress, Arabidopsis thaliana
R0251 Enhancer, 1st intron Tm1 (Tropomyosin1) fruit fly, Drosophila melanogaster
R0252 intronic enhancer ENO3 (Beta-Enolase-3) human, Homo sapiens
R0253 intron 1 enhancer (Spe1-Acc1 fragment) DYS (dystrophin) human, Homo sapiens
R0254 1. intron NG-CAM (neuron-glia cell adhesion molecule) chick, Gallus gallus
R0255 enhancer (first intron) SM-CALP (Smooth Muscle Calponin) mouse, Mus musculus
R0256 intron 1 ODC (ornithine decarboxylase) rat, Rattus norvegicus
R0257 intron 1 ODC (ornithine decarboxylase) rat, Rattus norvegicus
R0258 intron 2 Bmp-4 (bone morphogenetic protein 4) clawed frog, Xenopus laevis
R0259 intron TLN (talin) human, Homo sapiens
R0260 1st intron CD95 (FAS/APO-1/CD95) mouse, Mus musculus
R0261 1st intron mdm2 mouse, Mus musculus
R0262 1st intron mdm2 mouse, Mus musculus
R0263 intronic promoter mdm2 human, Homo sapiens
R0264 intronic promoter mdm2 human, Homo sapiens
R0265 third intron GADD45 human, Homo sapiens
R0266 intron 1 IGF-BP3 (insulin-like growth factor binding protein 3) human, Homo sapiens
R0267 intron 2 IGF-BP3 (insulin-like growth factor binding protein 3) human, Homo sapiens
R0268 1st intron c-fos mouse, Mus musculus
R0269 2d intron PA26 human, Homo sapiens
R0270 1st intron TNFRSF6 (tumor necrosis factor superfamily, member 6) human, Homo sapiens
R0271 1st intron c-Ha-ras1 human, Homo sapiens
R0272 1st intron cycG (cyclin G) rat, Rattus norvegicus
R0273 intron 1 cdc25A (cell division cycle gene 25A) human, Homo sapiens
R0274 intron 1 cdc25A (cell division cycle gene 25A) human, Homo sapiens
R0275 intron 2 cdc25A (cell division cycle gene 25A) human, Homo sapiens
R0276 first intron MIMECAN (Mimecan/Osteoglycin) human, Homo sapiens
R0277 intron ZAC human, Homo sapiens
R0278 intronic enhancer WT1 (Wilms tumor human, Homo sapiens
R0279 intron 1 PFKL (phosphofructokinase, liver, B-type) mouse, Mus musculus
R0280 the first third of the 1st intron Cr2 (complement receptor 2) mouse, Mus musculus
R0281 the first third of the 1st intron Cr2 (complement receptor 2) mouse, Mus musculus
R0282 the first third of the 1st intron Cr2 (complement receptor 2) mouse, Mus musculus
R0283 the first third of the 1st intron Cr2 (complement receptor 2) mouse, Mus musculus
R0284 the first third of the 1st intron Cr2 (complement receptor 2) mouse, Mus musculus
R0285 the first third of the 1st intron Cr2 (complement receptor 2) mouse, Mus musculus
R0286 the first third of the 1st intron Cr2 (complement receptor 2) mouse, Mus musculus
R0287 the first third of the 1st intron Cr2 (complement receptor 2) mouse, Mus musculus
R0288 the first third of the 1st intron Cr2 (complement receptor 2) mouse, Mus musculus
R0289 the first third of the 1st intron Cr2 (complement receptor 2) mouse, Mus musculus
R0290 the first third of the 1st intron Cr2 (complement receptor 2) mouse, Mus musculus
R0291 the first third of the 1st intron Cr2 (complement receptor 2) mouse, Mus musculus
R0292 the first third of the 1st intron Cr2 (complement receptor 2) mouse, Mus musculus
R0293 the first third of the 1st intron Cr2 (complement receptor 2) mouse, Mus musculus
R0294 first intron NTC12 (Ntc12 protein) tobacco, Nicotiana tabacum
R0295 2d intron FGF19 (fibroblast growth factor 19) human, Homo sapiens
R0296 1st intron PRST-C3 (prostatein C3(1) subunit) rat, Rattus norvegicus
R0297 single intron DTA4 (Identified as target of the AGL15 binding motif CArG) thale cress, Arabidopsis thaliana

Department of Biological Science and Technology, Institute of Bioinformatics, National Chiao Tung University, Taiwan
Contact with Dr. Hsien-Da Huang