RegRNA
A Regulatory RNA Motifs and Elements Finder
  Release 1.0, Jan 2006
 
 
 

Regulatory Motif Classes
 
Regulatory RNA Motifs in UTR
Riboswitches
Exonic Splicing Regulatory Motifs
Intronic Splicing Regulatory Motifs
Transcriptional Regulatory RNA Motifs
miRNA
 
Regulatory RNA Motifs in UTR  40 entries
Accession Name Taxon Range
R0001 Histone 3'UTR stem-loop structure (HSL3) UTR, 5' and 3' UTRs
R0002 Iron Responsive Element (IRE) UTR, 5' and 3' UTRs
R0003 Selenocysteine Insertion Sequence (SECIS) - type 1 3UTR, 3'UTRs
R0004 Selenocysteine Insertion Sequence (SECIS) - type 2 3UTR, 3'UTRs
R0005 Amyloid precursor protein mRNA stability control element (APP_SCE) UTR, 5' and 3' UTRs
R0006 Cytoplasmic polyadenylation element (CPE) 3UTR, 3'UTRs
R0007 TGE translational regulation element (TGE) UTR, 5' and 3' UTRs
R0008 Nanos translation control element (NANOS_TCE) UTR, 5' and 3' UTRs
R0009 15-Lipoxygenase Differentiation Control Element (15-LOX-DICE) UTR, 5' and 3' UTRs
R0010 AU-rich class-2 Element (ARE2) 3UTR, 3'UTRs
R0011 Terminal Oligopyrimidine Tract (TOP) 5UTR, 5'UTRs
R0012 Glusose transporter type-1 3'UTR cis-acting element(GLUT1) UTR, 5' and 3' UTRs
R0013 Tumor necrosis factor alpha 3'UTR cis-acting element(TNF) UTR, 5' and 3' UTRs
R0014 Vimentin 3'UTR cis-acting element(VIM3) UTR, 5' and 3' UTRs
R0015 Internal Ribosome Entry Site (IRES) 5UTR, 5'UTRs
R0016 Male specific lethal 5'UTR cis-acting element (MSL2-5UTR) 5INV, 5'UTRs from invertebrate mRNAs
R0017 Male specific lethal 3'UTR cis-acting element (MSL2-3UTR) 3INV, 3'UTRs from invertebrate mRNAs
R0018 Ribosomal S12 mitochondrial protein 5'UTR translation control element (RPMS12_TCE) UTR, 5' and 3' UTRs
R0019 Bruno 3'UTR responsive element (BRE) UTR, 5' and 3' UTRs
R0020 Alcohol dehydrogenase 3'UTR downregulation control element (ADH_DRE) 3INV, 3'UTRs from invertebrate mRNAs
R0021 Barley yellow dwarf virus translation control element (BYDV_TE) 3PLN, 3'UTRs from plant mRNAs 3VRL, 3'UTRs from viral mRNAs
R0022 Proneural Box (PB) 3HUM, 3'UTRs from human mRNAs 3INV, 3'UTRs from invertebrate mRNAs 3MAM, 3'UTRs from mammalian (not human/not rodent) mRNAs 3MUS, 3'UTRs from mouse mRNAs 3ROD, 3'UTRs from rodent (not mouse) mRNAs 3VRT, 3'UTRs from vertebrate (not mammal) mRNAs
R0023 K-Box (KB) 3HUM, 3'UTRs from human mRNAs 3INV, 3'UTRs from invertebrate mRNAs 3MAM, 3'UTRs from mammalian (not human/not rodent) mRNAs 3MUS, 3'UTRs from mouse mRNAs 3ROD, 3'UTRs from rodent (not mouse) mRNAs 3VRT, 3'UTRs from vertebrate (not mammal) mRNAs
R0024 Brd-Box (Brd) 3HUM, 3'UTRs from human mRNAs 3INV, 3'UTRs from invertebrate mRNAs 3MAM, 3'UTRs from mammalian (not human/not rodent) mRNAs 3MUS, 3'UTRs from mouse mRNAs 3ROD, 3'UTRs from rodent (not mouse) mRNAs 3VRT, 3'UTRs from vertebrate (not mammal) mRNAs
R0025 GY-Box (GY) 3HUM, 3'UTRs from human mRNAs 3INV, 3'UTRs from invertebrate mRNAs 3MAM, 3'UTRs from mammalian (not human/not rodent) mRNAs 3MUS, 3'UTRs from mouse mRNAs 3ROD, 3'UTRs from rodent (not mouse) mRNAs 3VRT, 3'UTRs from vertebrate (not mammal) mRNAs
R0026 Androgen receptor GU-rich element (AR_CURE) 3HUM, 3'UTRs from human mRNAs 3INV, 3'UTRs from invertebrate mRNAs 3MAM, 3'UTRs from mammalian (not human/not rodent) mRNAs 3MUS, 3'UTRs from mouse mRNAs 3ROD, 3'UTRs from rodent (not mouse) mRNAs 3VRT, 3'UTRs from vertebrate (not mammal) mRNAs
R0027 Elastin G3A 3'UTR stability motif (G3A) 3HUM, 3'UTRs from human mRNAs 3MAM, 3'UTRs from mammalian (not human/not rodent) mRNAs 3MUS, 3'UTRs from mouse mRNAs 3ROD, 3'UTRs from rodent (not mouse) mRNAs 3VRT, 3'UTRs from vertebrate (not mammal) mRNAs
R0028 Insulin 3'UTR stability element (INS_SCE) 3HUM, 3'UTRs from human mRNAs 3MAM, 3'UTRs from mammalian (not human/not rodent) mRNAs 3MUS, 3'UTRs from mouse mRNAs 3ROD, 3'UTRs from rodent (not mouse) mRNAs 3VRT, 3'UTRs from vertebrate (not mammal) mRNAs
R0029 Beta-actin 3'UTR zipcode (ACTIN_ZIP3) 3HUM, 3'UTRs from human mRNAs 3MAM, 3'UTRs from mammalian (not human/not rodent) mRNAs 3MUS, 3'UTRs from mouse mRNAs 3ROD, 3'UTRs from rodent (not mouse) mRNAs 3VRT, 3'UTRs from vertebrate (not mammal) mRNAs
R0030 Gap-43 Stabilization Element (GAP-43) 3HUM, 3'UTRs from human mRNAs 3MAM, 3'UTRs from mammalian (not human/not rodent) mRNAs 3MUS, 3'UTRs from mouse mRNAs 3ROD, 3'UTRs from rodent (not mouse) mRNAs 3VRT, 3'UTRs from vertebrate (not mammal) mRNAs
R0031 CaMKII/Ng dendritic localization element (CNDLE) 3HUM, 3'UTRs from human mRNAs 3MAM, 3'UTRs from mammalian (not human/not rodent) mRNAs 3MUS, 3'UTRs from mouse mRNAs 3ROD, 3'UTRs from rodent (not mouse) mRNAs 3VRT, 3'UTRs from vertebrate (not mammal) mRNAs
R0032 alpha-globin 3'UTR C-rich stability determinant (AG-CRSD) HUM, UTRs from human mRNAs MAM, UTRs from mammalian (not human/not rodent) mRNAs MUS, UTRs from mouse mRNAs ROD, UTRs from rodent (not mouse) mRNAs VRT, UTRs from vertebrate (not mammal) mRNAs
R0033 Upstream Open Reading Frame (uORF) 5UTR, 5'UTRs
R0034 Gamma interferon activated inhibitor of Ceruloplasmin mRNA translation (GAIT element) HUM, UTRs from human mRNAs MAM, UTRs from mammalian (not human/not rodent) mRNAs MUS, UTRs from mouse mRNAs ROD, UTRs from rodent (not mouse) mRNAs VRT, UTRs from vertebrate (not mammal) mRNAs
R0035 Mos polyadenylation response element (Mos-PRE) HUM, UTRs from human mRNAs MAM, UTRs from mammalian (not human/not rodent) mRNAs MUS, UTRs from mouse mRNAs ROD, UTRs from rodent (not mouse) mRNAs VRT, UTRs from vertebrate (not mammal) mRNAs
R0036 Drosophila hairy mRNA localization element (HLE) INV, UTRs from invertebrate mRNAs
R0037 Myelin Basic Protein Localization Element (MBP-A2RE11) HUM, UTRs from human mRNAs MAM, UTRs from mammalian (not human/not rodent) mRNAs MUS, UTRs from mouse mRNAs ROD, UTRs from rodent (not mouse) mRNAs VRT, UTRs from vertebrate (not mammal) mRNAs
R0038 Protamine P1 3’UTR Y-Box recognition site (Protamine-YRS) HUM, UTRs from human mRNAs MAM, UTRs from mammalian (not human/not rodent) mRNAs MUS, UTRs from mouse mRNAs ROD, UTRs from rodent (not mouse) mRNAs VRT, UTRs from vertebrate (not mammal) mRNAs
R0039 Granulocyte colony-stimulating factor stem-loop destabilizing element (G-CSF_SLDE) HUM, UTRs from human mRNAs MAM, UTRs from mammalian (not human/not rodent) mRNAs MUS, UTRs from mouse mRNAs ROD, UTRs from rodent (not mouse) mRNAs VRT, UTRs from vertebrate (not mammal) mRNAs
R0040 Renin stability regulatory element (Ren_SRE) HUM, UTRs from human mRNAs MAM, UTRs from mammalian (not human/not rodent) mRNAs MUS, UTRs from mouse mRNAs ROD, UTRs from rodent (not mouse) mRNAs VRT, UTRs from vertebrate (not mammal) mRNAs

Department of Biological Science and Technology, Institute of Bioinformatics, National Chiao Tung University, Taiwan
Contact with Dr. Hsien-Da Huang