RegRNA
A Regulatory RNA Motifs and Elements Finder
  Release 1.0, Jan 2006
 
 
 
 
01-06-2006
  -Web site correction
02-09-2006
  -AEdb integration
02-12-2006
  -UTRSite updating
02-13-2006
  -Web site correction
02-15-2006
  -Riboswitches updating
08-20-2010
  -miRNA updating
08-21-2010
  -UTRsite updating
08-21-2010
  -Web site working
 
 

        RegRNA is an integrated web server for identifying the homologs of Regulatory RNA motifs and elements against an input mRNA sequence. Both sequence homologs or structural homologs of regulatory RNA motifs can be identified. The regulatory RNA motifs supported in RegRNA are categorized into several classes:

  • Motifs in mRNA 5'-UTR and 3'-UTR.
  • Motifs involved in mRNA splicing.
  • Motifs involved in transcriptional regulation.
  • Other motifs in mRNA, such as riboswitches.
  • Prediction of the splice sites, such as splicing donor/acceptor sites.
  • RNA structural features, such as inverted repeat.
  • miRNA target sites.
Prediction of the regulatory RNA motifs and elements.
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Citing RegRNA

H.Y. Huang, C.H. Chien, K.H. Jen, and H.D. Huang (2006) "RegRNA: A regulatory RNA motifs and elements finder" Nucleic Acids Research, Vol 34, W429-W434. [PubMed]

 
Department of Biological Science and Technology, Institute of Bioinformatics, National Chiao Tung University, Taiwan
Contact with Dr. Hsien-Da Huang