A Regulatory RNA Motifs and Elements Finder
  Release 1.0, Jan 2006

Related Web Sites and Databases
  • RNAMotif: It searches a database for RNA sequences that match a "motif" describing secondary structure interactions.
  • PatSearch: A pattern matching tool, that can find a well defined pattern against a given sequence(s) or database (primary or specialized) divisions.
  • Transterm: An interactive database providing access to RNA sequences and their associated motifs.
  • UTRScan: The program looks for UTR functional elements by searching through user submitted sequence data for the patterns defined in the UTRsite collection.
  • RibEx: A web server for locating riboswitches and other conserved bacterial regulatory elements.
  • Riboswitch finder: A tool for identification of riboswitch RNAs.


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Abreu-Goodger, C. and Merino, E. (2005) RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements. Nucleic Acids Res , 33, W690-692.

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Department of Biological Science and Technology, Institute of Bioinformatics, National Chiao Tung University, Taiwan
Contact with Dr. Hsien-Da Huang